I’ve sent a pull-request to the Fiji repository to fix this API bug.This browser is not able to show SVG: try Firefox, Chrome, Safari, or Opera instead. If one copies the whole Java class and makes this method public, then you can open the MHA file with this code: ImagePlus imp = new MetaImage_Reader().load("C:/structure/data/","Normal001-DTI.mha", "Normal001-DTI.mha", true) If you look in the fiji plugin mentioned initially, you can see that its method load() would actually support loading the file but is private: So I assume it’s not properly supported by SCIFIO.
METAIMAGE VOLUME FULL
Io.: io.scif.FormatException: C:/structure/data/Normal001-DTI.mha: No supported format found.Īt io.(ImgOpener.java:425)Īt io.(ImgOpener.java:145)Īt io.(ImgOpener.java:113)Īt .(Playground.java:12)Ĭaused by: io.scif.FormatException: C:/structure/data/Normal001-DTI.mha: No supported format found. Metamaterials enable precise tailoring of lightmatter interactions at the subwavelength scale, permitting access to the full range of electromagnetic responses encoded in Maxwell’s. The error message is: Failed to open ImgPlus for source: C:/structure/data/Normal001-DTI.mha SCIFIOImgPlus image = IO.open("C:/structure/data/Normal001-DTI.mha") Furthermore, with the Fiji dependencies mentioned above one can try this: import io.
IJ.openImage() doesn’t work as reported earlier. Then, I tried to open it from a maven/ImageJ project in IntelliJ. I just tried opening this MHA file with Fiji and it works fine: Io.scif.FormatException: C:\.\Normal001-MRA.mha: No supported format found.Īt io.(DefaultFormatService.java:350)Īt io.(DefaultFormatService.java:316)Īt io.(DefaultDatasetIOService.java:82)Īt io.scif.io.DatasetIOPlugin.supportsOpen(DatasetIOPlugin.java:64)Īt .IOService.getOpener(IOService.java:55)Īt .DefaultIOService.open(DefaultIOService.java:66) (scroll down to the bottom of the page, and select a folder, such as ‘Normal-109’ for instance, then ‘T2’) NB: By MHA I mean radiographic image files, such as the ones freely available here: What am I missing? I carefully looked in the forum, but can’t understand my mistake. When the second line is executed, I get: io.scif.FormatException: C:\.\Normal001-MRA.mha: No supported format found.Īt io.(DefaultFormatService.java:351)Īt io.(DefaultFormatService.java:317)
: .SlideBook6ReaderĪt (Unknown Source)Īt (Unknown Source)Īt $AppClassLoader.loadClass(Unknown Source)Īt 0(Native Method)Īt (Unknown Source)Īt (ClassList.java:196)Īt (ClassList.java:258)Īt .(ClassList.java:138)Īt .(ClassList.java:122)Īt (ImageReader.java:79)Īt io.scif.bf.BioFormatsFormat.cacheReaderClasses(BioFormatsFormat.java:487)Īt io.scif.bf.BioFormatsFormat.(BioFormatsFormat.java:135)Īt 0(Native Method)Īt (Unknown Source)Īt (Unknown Source)Īt .newInstance(Unknown Source)Īt (Unknown Source)Īt .createInstance(PluginInfo.java:304)Īt .createInstance(DefaultPluginService.java:236)Īt .createInstances(DefaultPluginService.java:225)Īt .createInstancesOfType(DefaultPluginService.java:216)Īt io.$2.run(DefaultFormatService.java:451)Īt $2.run(DefaultThreadService.java:220)Īt $RunnableAdapter.call(Unknown Source)Īt .run(Unknown Source)Īt .runWorker(Unknown Source)Īt $n(Unknown Source) Log4j:WARN Please initialize the log4j system properly.ġ7:35:22.215 DEBUG - Could not find .SlideBook6Reader
I get an exception when the first line is executed: log4j:WARN No appenders could be found for logger (.EventService). Object dataset = ij.io().open(mhaFile.getAbsolutePath())
METAIMAGE VOLUME CODE
My reading code is : ImageJ ij = new ImageJ() I believe I have declared the right things in my pom.xml file: I am trying to build a very simple Java/Maven application that reads MHA files.
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